Astronaut Tony Nelson is stranded on a deserted island when his space capsule is blown off course. He finds a mysterious bottle which, when rubbed, releases a beautiful, 2000 year old genie. Jeannie promises to serve him and grant his wishes but her overeagerness to please often get him in trouble.
Season Two: 31 episodes
| Ep | PN | Airdate | Title |
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| 31 | 031 | Sep 12/66 | Happy Anniversary |
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| 32 | 032 | Sep 19/66 | Always on Sunday |
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| 33 | 033 | Sep 26/66 | My Master, the Rich Tycoon |
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| 34 | 034 | Oct 03/66 | My Master, the Rainmaker |
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| 35 | 035 | Oct 10/66 | My Wild-Eyed Master |
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| 36 | 036 | Oct 17/66 | What's New, Poodle Dog? |
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| 37 | 037 | Oct 24/66 | Fastest Gun in the East |
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| 38 | 038 | Oct 31/66 | How to Be a Genie in Ten Easy Lessons |
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| 39 | 039 | Nov 07/66 | Who Needs a Green-Eyed Jeannie? |
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| 40 | 040 | Nov 14/66 | The Girl Who Never Had a Birthday |
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| 41 | 041 | Nov 21/66 | The Girl Who Never Had a Birthday, Part 2 |
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| 42 | 042 | Nov 28/66 | How Do You Beat Superman? |
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| 43 | 043 | Dec 05/66 | My Master, the Great Caruso |
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| 44 | 044 | Dec 12/66 | The Greatest Lover in the World |
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| 45 | 045 | Dec 19/66 | Jeannie Breaks the Bank |
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| 46 | 046 | Dec 26/66 | My Master, the Author |
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| 47 | 047 | Jan 09/67 | The Greatest Invention in the World |
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| 48 | 048 | Jan 16/67 | My Master, the Spy |
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| 49 | 049 | Jan 23/67 | You Can't Arrest Me, I Don't Have a Driver's Liense |
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| 50 | 050 | Jan 30/67 | One of Our Bottles is Missing |
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| 51 | 051 | Feb 06/67 | My Poor Master, the Civilian |
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| 52 | 052 | Feb 20/67 | There Goes the Best Genie I Ever Had |
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| 53 | 053 | Feb 27/67 | The Greatest Entertainer in the World |
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| 54 | 054 | Mar 06/67 | My Incredible Shrinking Master |
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| 55 | 055 | Mar 13/67 | My Master, the Pirate |
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| 56 | 056 | Mar 20/67 | A Secretary is Not a Toy |
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| 57 | 057 | Mar 27/67 | There Goes the Bride |
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| 58 | 058 | Apr 03/67 | My Master, Napoleon's Buddy |
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| 59 | 059 | Apr 10/67 | The Birds and the Bees Bit |
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| 60 | 060 | Apr 17/67 | My Master, the Swinging Bachelor |
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| 61 | 061 | Apr 24/67 | The Mod Party |
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Season Three: 26 episodes
| Ep | PN | Airdate | Title |
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| 62 | 062 | Sep 12/67 | Fly Me to the Moon |
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| 63 | 063 | Sep 19/67 | Jeannie or the Tiger |
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| 64 | 064 | Sep 26/67 | The Greatest Con Artist in the World |
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| 65 | 065 | Oct 03/67 | My Turned-on Master |
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| 66 | 066 | Oct 10/67 | My Master, the Weakling |
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| 67 | 067 | Oct 17/67 | Jeannie, the Hip Hippie |
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| 68 | 068 | Oct 31/67 | Everybody's a Movie Star |
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| 69 | 069 | Nov 07/67 | Who Are You Calling a Genie? |
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| 70 | 070 | Nov 14/67 | Meet My Master's Mother |
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| 71 | 071 | Nov 21/67 | Here Comes Bootsie Nightingale |
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| 72 | 072 | Nov 28/67 | Tony's Wife |
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| 73 | 073 | Dec 05/67 | Jeannie and the Great Bank Robbery |
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| 74 | 074 | Dec 12/67 | My Son, the Genie |
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| 75 | 075 | Dec 26/67 | Jeannie Goes to Honolulu |
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| 76 | 076 | Jan 02/68 | The Battle of Waikiki |
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| 77 | 077 | Jan 16/68 | Genie, Genie, Who's Got the Genie? |
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| 78 | 078 | Jan 23/68 | Genie, Genie, Who's Got the Genie?, Part 2 |
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| 79 | 079 | Jan 30/68 | Genie, Genie, Who's Got the Genie?, Part 3 |
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| 80 | 080 | Feb 06/68 | Genie, Genie, Who's Got the Genie?, Part 4 |
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| 81 | 081 | Feb 13/68 | Please Don't Feed the Astronauts |
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| 82 | 082 | Feb 20/68 | My Master, the Ghost Breaker |
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| 83 | 083 | Feb 27/68 | Divorce, Genie Style |
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| 84 | 084 | Mar 05/68 | My Double-Crossing Master |
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| 85 | 085 | Mar 12/68 | Have You Ever Had a Genie Hate You? |
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| 86 | 086 | Mar 19/68 | Operation: First Couple on the Moon |
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| 87 | 087 | Mar 26/68 | Haven't I Seen Me Someplace Before? |
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